Improved database schema (v2.3) working with the auto-segmentation too
Improved WIB annotation module and more supported image formats
Bug fixes
Detailed component list
Improved CCDB schema version 2.3
Image utilities
Downsampler – Efficiently convert and downsample the high resolution images
WIB creator - Create the WIB tiled images
Vcutter – Crop and downsample the IMOD volume data
Cutter – Slice the volume data as a 2D image
NCMIR data workflow
Browse, visualize , validate and archive data
A bridge between the data grid and the users
Utilize the super-computer cluster like triton for the intensive calculation
WIB
Supported formats
OMERO raw data format (IRODS)
IMARIS .ims format (IRODS)
The tiled jpeg and png images(HTTP)
The tiled jpeg images (HTTP)
PPM (SRB or IRODS)
TIFF (SRB or IRODS)
TIFF folder (SRB or IRODS)
IMG (SRB or IRODS)
DM3 (SRB or IRODS)
PNZ (HTTP)
IMOD - .st, .rec, .mrc (SRB or IRODS)
Analyze 7.5 (SRB or IRODS)
Features
Ontology annotation
Zoom or pan high resolution images
Enable or disable color channels
Adjust the brightness
Adjust the contrast (auto-adjusted)
Sharing the WIB view with the collaborators
Overlay with the Allan brain atlas
Cytoseg
Support format(s)
TIFF images
Generate the automatic segmentation of 3D biological datasets, with emphasis on 3D electron microscopy
Contact:
webmaster@ccdb.ucsd.edu
Terms and Conditions:
BSD license
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